PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013269-PA
Common NameOsI_12910
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 345aa    MW: 36919.6 Da    PI: 9.7462
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013269-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.61.4e-1741108268
          trihelix   2 WtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                       Wt  e+++L+ea++++ +  r ++ +  ++W++v +++++rg++rs++qC+++w+nl ++ykk++++e
  BGIOSGA013269-PA  41 WTLPETMLLVEAKKRVSDGRRpAADQGLARWRWVEDYCWRRGCRRSQNQCNDRWDNLMRDYKKVRAHE 108
                       *************99988888357899*************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.0843398IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-534100IPR009057Homeodomain-like
SuperFamilySSF466892.96E-636100IPR009057Homeodomain-like
PfamPF138376.3E-1439108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDADVLLGQE EDEETMNAAM AASTAGSAMA AAAREYRRGN WTLPETMLLV EAKKRVSDGR  60
RPAADQGLAR WRWVEDYCWR RGCRRSQNQC NDRWDNLMRD YKKVRAHELA AAGGGGGGGP  120
AESYWVMGRT ERKEKGLPAN LLREIYDAMG EVVERRPMSS GGGGGGAVFL AGASSSGSGG  180
LADVPAMAMQ ASPLAQLLPR PLGDGELQLG VAGEEEEASV AGQPSHRGAA RHLRRQEGRV  240
TKNTTTTTTS TLIMAPTRAP TTTAAWPRAI GRCAAILSVA LENREASEER RHREVVAAEE  300
RRGRARQARR EAGEQCMAGL ATAVSQLAGS MLALAAKRRG PAAPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1357920.0AC135792.3 Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629607.11e-155PREDICTED: trihelix transcription factor ASR3-like
TrEMBLA2XKD60.0A2XKD6_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA013269-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.14e-42Trihelix family protein